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The studies were relatively small, however, and had limited resolution

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Data availability The complete data and code for this study are available at Abbreviations BCFAs: Branched-chain fatty acids CPM: Copies per million FFQ: Food-frequency questionnaire GLMM: Generalized linear mixed regression model IGC: Integrated gene catalog KO: KEGG orthologue LAB: Lactic acid-producing bacteria SCFAs: Short-chain fatty acids TPM: Transcripsper million UHPLC/MS/MS: Ultra-high-performance liquid chromatography/tandem accurate mass spectrometry UMAP: Uniform Manifold Approximation and Projection References Gill SR, Pop M, DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, et al